You will need to edit the module file flashscript/playertags.js
delete lines 11 and 17, and modify line 12 from
+ '<embed src="' + playerMovie +'" quality="high" id="embedPlayer"'
to
+ '<embed src="' + playerMovie +'" quality="high" id="embedPlayer" wmode="transparent" '
I will add this modification to a new release. Originally the transparent background was avoided to deal with a bug that affected earlier releases of Firefox, but this problem does not occur with current versions of Firefox, so it is not really necessary no.